Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC16.83■□□□□ 0.28
Col1a1P11087 Gm9257-201ENSMUST00000221254 232 ntBASIC16.83■□□□□ 0.28
Col1a1P11087 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.83■□□□□ 0.28
Col1a1P11087 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC16.83■□□□□ 0.28
Col1a1P11087 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col1a1P11087 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.83■□□□□ 0.28
Col1a1P11087 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Col1a1P11087 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.82■□□□□ 0.28
Col1a1P11087 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Gm12928-201ENSMUST00000117115 573 ntBASIC16.82■□□□□ 0.28
Col1a1P11087 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC16.82■□□□□ 0.28
Col1a1P11087 Gm26464-201ENSMUST00000157094 305 ntBASIC16.82■□□□□ 0.28
Col1a1P11087 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Gm8652-201ENSMUST00000181363 964 ntBASIC16.82■□□□□ 0.28
Col1a1P11087 Gm27731-201ENSMUST00000185192 107 ntBASIC16.82■□□□□ 0.28
Col1a1P11087 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Col1a1P11087 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Col1a1P11087 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col1a1P11087 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC16.81■□□□□ 0.28
Col1a1P11087 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC16.81■□□□□ 0.28
Col1a1P11087 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Col1a1P11087 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC16.81■□□□□ 0.28
Col1a1P11087 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Gm6091-201ENSMUST00000098307 165 ntBASIC16.81■□□□□ 0.28
Col1a1P11087 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.81■□□□□ 0.28
Col1a1P11087 AL645783.1-201ENSMUST00000221416 1832 ntBASIC16.81■□□□□ 0.28
Col1a1P11087 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col1a1P11087 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col1a1P11087 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col1a1P11087 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.81■□□□□ 0.28
Col1a1P11087 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col1a1P11087 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC16.8■□□□□ 0.28
Col1a1P11087 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.8■□□□□ 0.28
Col1a1P11087 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col1a1P11087 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.8■□□□□ 0.28
Col1a1P11087 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Zscan30-202ENSMUST00000224144 1458 ntBASIC16.8■□□□□ 0.28
Col1a1P11087 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
Col1a1P11087 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col1a1P11087 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Gm15376-201ENSMUST00000122258 783 ntBASIC16.8■□□□□ 0.28
Col1a1P11087 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col1a1P11087 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.8■□□□□ 0.28
Col1a1P11087 AC140451.2-201ENSMUST00000228030 664 ntBASIC16.8■□□□□ 0.28
Col1a1P11087 AC122459.1-201ENSMUST00000228373 885 ntBASIC16.8■□□□□ 0.28
Col1a1P11087 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col1a1P11087 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms