Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.17■□□□□ 0.34
Col3a1P08121 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col3a1P08121 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gm15163-201ENSMUST00000120749 1302 ntBASIC17.17■□□□□ 0.34
Col3a1P08121 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC17.17■□□□□ 0.34
Col3a1P08121 Gm12091-201ENSMUST00000146791 830 ntBASIC17.17■□□□□ 0.34
Col3a1P08121 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC17.17■□□□□ 0.34
Col3a1P08121 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC17.17■□□□□ 0.34
Col3a1P08121 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col3a1P08121 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col3a1P08121 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Col3a1P08121 Gm12341-201ENSMUST00000119724 503 ntBASIC17.16■□□□□ 0.34
Col3a1P08121 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC17.16■□□□□ 0.34
Col3a1P08121 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Gm18027-201ENSMUST00000218947 619 ntBASIC17.16■□□□□ 0.34
Col3a1P08121 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col3a1P08121 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 AC154527.2-201ENSMUST00000225256 1466 ntBASIC17.16■□□□□ 0.34
Col3a1P08121 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col3a1P08121 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Col3a1P08121 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 AC166574.6-201ENSMUST00000227889 1806 ntBASIC17.15■□□□□ 0.34
Col3a1P08121 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC17.15■□□□□ 0.34
Col3a1P08121 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC17.15■□□□□ 0.34
Col3a1P08121 Gm37748-201ENSMUST00000194379 1140 ntBASIC17.15■□□□□ 0.34
Col3a1P08121 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Col3a1P08121 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Col3a1P08121 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Col3a1P08121 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Col3a1P08121 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Col3a1P08121 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Col3a1P08121 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.34
Col3a1P08121 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.14■□□□□ 0.33
Col3a1P08121 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.14■□□□□ 0.33
Col3a1P08121 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Col3a1P08121 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC17.14■□□□□ 0.33
Col3a1P08121 AC155286.1-201ENSMUST00000218632 448 ntBASIC17.14■□□□□ 0.33
Col3a1P08121 Gm25857-201ENSMUST00000082788 129 ntBASIC17.14■□□□□ 0.33
Col3a1P08121 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Col3a1P08121 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms