Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm18737-201ENSMUST00000173594 937 ntBASIC13.2□□□□□ -0.3
Lmx1bO88609 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Gm9824-201ENSMUST00000178707 561 ntBASIC13.2□□□□□ -0.3
Lmx1bO88609 Gm27622-201ENSMUST00000183779 60 ntBASIC13.2□□□□□ -0.3
Lmx1bO88609 Gm30437-201ENSMUST00000206086 1201 ntBASIC13.2□□□□□ -0.3
Lmx1bO88609 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Lmx1bO88609 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Lmx1bO88609 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Lmx1bO88609 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.19□□□□□ -0.3
Lmx1bO88609 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Gm13015-201ENSMUST00000118674 204 ntBASIC13.19□□□□□ -0.3
Lmx1bO88609 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Mir7023-201ENSMUST00000185093 64 ntBASIC13.19□□□□□ -0.3
Lmx1bO88609 AC126408.1-201ENSMUST00000225184 523 ntBASIC13.19□□□□□ -0.3
Lmx1bO88609 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.19□□□□□ -0.3
Lmx1bO88609 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Lmx1bO88609 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Lmx1bO88609 Gm11960-202ENSMUST00000181063 2858 ntBASIC13.18□□□□□ -0.3
Lmx1bO88609 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC13.18□□□□□ -0.3
Lmx1bO88609 Gm27618-201ENSMUST00000183671 60 ntBASIC13.18□□□□□ -0.3
Lmx1bO88609 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.18□□□□□ -0.3
Lmx1bO88609 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.18□□□□□ -0.3
Lmx1bO88609 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
Lmx1bO88609 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Lmx1bO88609 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms