Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Pcdh1F7BJK1 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Best4-ps-201ENSMUST00000129783 1380 ntBASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gm25990-201ENSMUST00000102440 86 ntBASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Pcdh1F7BJK1 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Pcdh1F7BJK1 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Pcdh1F7BJK1 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Pcdh1F7BJK1 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
Pcdh1F7BJK1 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Pcdh1F7BJK1 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm24589-201ENSMUST00000116692 94 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm7153-201ENSMUST00000117092 455 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm11764-201ENSMUST00000120221 623 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm27459-201ENSMUST00000184860 107 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm34391-201ENSMUST00000203706 907 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Umpk-ps-201ENSMUST00000211897 827 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Gm18246-201ENSMUST00000221023 728 ntBASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Pcdh1F7BJK1 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms