Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Smarca1Q6PGB8 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Smarca1Q6PGB8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Smarca1Q6PGB8 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC24.67■■□□□ 1.54
Smarca1Q6PGB8 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC24.67■■□□□ 1.54
Smarca1Q6PGB8 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Smarca1Q6PGB8 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Smarca1Q6PGB8 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC24.66■■□□□ 1.54
Smarca1Q6PGB8 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Smarca1Q6PGB8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Smarca1Q6PGB8 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Smarca1Q6PGB8 AC151971.4-201ENSMUST00000214717 704 ntBASIC24.65■■□□□ 1.54
Smarca1Q6PGB8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Smarca1Q6PGB8 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC24.65■■□□□ 1.54
Smarca1Q6PGB8 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
Smarca1Q6PGB8 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.53
Smarca1Q6PGB8 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
Smarca1Q6PGB8 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Smarca1Q6PGB8 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
Smarca1Q6PGB8 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Smarca1Q6PGB8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.62■■□□□ 1.53
Smarca1Q6PGB8 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Smarca1Q6PGB8 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Gm44428-201ENSMUST00000204474 874 ntBASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Smarca1Q6PGB8 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
Smarca1Q6PGB8 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Smarca1Q6PGB8 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Smarca1Q6PGB8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Smarca1Q6PGB8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Smarca1Q6PGB8 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC24.59■■□□□ 1.53
Smarca1Q6PGB8 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Smarca1Q6PGB8 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Smarca1Q6PGB8 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Smarca1Q6PGB8 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Smarca1Q6PGB8 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Smarca1Q6PGB8 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Smarca1Q6PGB8 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Smarca1Q6PGB8 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.54■■□□□ 1.52
Smarca1Q6PGB8 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Smarca1Q6PGB8 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Smarca1Q6PGB8 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
Smarca1Q6PGB8 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Gm6934-201ENSMUST00000194780 1905 ntBASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Smarca1Q6PGB8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Smarca1Q6PGB8 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Smarca1Q6PGB8 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Smarca1Q6PGB8 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Smarca1Q6PGB8 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 AC164433.2-201ENSMUST00000226346 1701 ntBASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Smarca1Q6PGB8 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms