Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Snrnp40Q6PE01 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.78■□□□□ 0.76
Snrnp40Q6PE01 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.78■□□□□ 0.76
Snrnp40Q6PE01 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Snrnp40Q6PE01 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Snrnp40Q6PE01 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Snrnp40Q6PE01 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Snrnp40Q6PE01 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Snrnp40Q6PE01 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Snrnp40Q6PE01 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Snrnp40Q6PE01 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Snrnp40Q6PE01 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Snrnp40Q6PE01 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Snrnp40Q6PE01 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Snrnp40Q6PE01 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.75■□□□□ 0.75
Snrnp40Q6PE01 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Snrnp40Q6PE01 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Snrnp40Q6PE01 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Snrnp40Q6PE01 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Snrnp40Q6PE01 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.72■□□□□ 0.75
Snrnp40Q6PE01 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.72■□□□□ 0.75
Snrnp40Q6PE01 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Snrnp40Q6PE01 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Snrnp40Q6PE01 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Snrnp40Q6PE01 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Snrnp40Q6PE01 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Snrnp40Q6PE01 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Snrnp40Q6PE01 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Snrnp40Q6PE01 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.69■□□□□ 0.74
Snrnp40Q6PE01 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.69■□□□□ 0.74
Snrnp40Q6PE01 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Snrnp40Q6PE01 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Snrnp40Q6PE01 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Snrnp40Q6PE01 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Snrnp40Q6PE01 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Snrnp40Q6PE01 Gm7417-201ENSMUST00000192950 473 ntBASIC19.68■□□□□ 0.74
Snrnp40Q6PE01 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Snrnp40Q6PE01 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.67■□□□□ 0.74
Snrnp40Q6PE01 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Snrnp40Q6PE01 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Snrnp40Q6PE01 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Snrnp40Q6PE01 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Snrnp40Q6PE01 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Snrnp40Q6PE01 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Snrnp40Q6PE01 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Snrnp40Q6PE01 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Snrnp40Q6PE01 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Snrnp40Q6PE01 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Snrnp40Q6PE01 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.62■□□□□ 0.73
Snrnp40Q6PE01 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Gm13241-201ENSMUST00000094493 780 ntBASIC19.61■□□□□ 0.73
Snrnp40Q6PE01 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms