Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
ShhQ62226 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ShhQ62226 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ShhQ62226 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ShhQ62226 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.45■□□□□ 0.86
ShhQ62226 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
ShhQ62226 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ShhQ62226 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ShhQ62226 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
ShhQ62226 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ShhQ62226 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ShhQ62226 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ShhQ62226 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ShhQ62226 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ShhQ62226 Gm45102-201ENSMUST00000207427 857 ntBASIC20.44■□□□□ 0.86
ShhQ62226 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.44■□□□□ 0.86
ShhQ62226 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
ShhQ62226 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ShhQ62226 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ShhQ62226 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.43■□□□□ 0.86
ShhQ62226 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.43■□□□□ 0.86
ShhQ62226 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.43■□□□□ 0.86
ShhQ62226 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ShhQ62226 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ShhQ62226 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
ShhQ62226 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ShhQ62226 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
ShhQ62226 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ShhQ62226 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.42■□□□□ 0.86
ShhQ62226 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ShhQ62226 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.42■□□□□ 0.86
ShhQ62226 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ShhQ62226 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
ShhQ62226 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ShhQ62226 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ShhQ62226 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
ShhQ62226 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ShhQ62226 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ShhQ62226 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
ShhQ62226 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ShhQ62226 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ShhQ62226 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ShhQ62226 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
ShhQ62226 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.4■□□□□ 0.86
ShhQ62226 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ShhQ62226 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.39■□□□□ 0.86
ShhQ62226 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ShhQ62226 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ShhQ62226 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
ShhQ62226 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ShhQ62226 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ShhQ62226 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ShhQ62226 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ShhQ62226 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
ShhQ62226 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ShhQ62226 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ShhQ62226 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ShhQ62226 Gm14117-201ENSMUST00000122417 843 ntBASIC20.38■□□□□ 0.85
ShhQ62226 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ShhQ62226 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ShhQ62226 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ShhQ62226 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ShhQ62226 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.37■□□□□ 0.85
ShhQ62226 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ShhQ62226 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.37■□□□□ 0.85
ShhQ62226 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ShhQ62226 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
ShhQ62226 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ShhQ62226 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.35■□□□□ 0.85
ShhQ62226 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
ShhQ62226 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
ShhQ62226 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.35■□□□□ 0.85
ShhQ62226 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ShhQ62226 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.34■□□□□ 0.85
ShhQ62226 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ShhQ62226 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ShhQ62226 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ShhQ62226 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ShhQ62226 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.33■□□□□ 0.85
ShhQ62226 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ShhQ62226 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.33■□□□□ 0.85
ShhQ62226 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
ShhQ62226 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ShhQ62226 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ShhQ62226 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ShhQ62226 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ShhQ62226 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ShhQ62226 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ShhQ62226 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
ShhQ62226 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ShhQ62226 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ShhQ62226 Gm43566-201ENSMUST00000196851 808 ntBASIC20.31■□□□□ 0.84
ShhQ62226 Terc-201ENSMUST00000082862 423 ntBASIC20.31■□□□□ 0.84
ShhQ62226 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ShhQ62226 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms