Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
RaraP11416 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
RaraP11416 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
RaraP11416 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RaraP11416 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
RaraP11416 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
RaraP11416 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
RaraP11416 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
RaraP11416 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
RaraP11416 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
RaraP11416 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
RaraP11416 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RaraP11416 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RaraP11416 AC154454.1-201ENSMUST00000225253 216 ntBASIC23.96■■□□□ 1.43
RaraP11416 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RaraP11416 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RaraP11416 Gm11599-201ENSMUST00000118720 878 ntBASIC23.95■■□□□ 1.42
RaraP11416 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RaraP11416 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
RaraP11416 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
RaraP11416 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
RaraP11416 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
RaraP11416 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
RaraP11416 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC23.95■■□□□ 1.42
RaraP11416 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RaraP11416 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RaraP11416 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RaraP11416 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
RaraP11416 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC23.94■■□□□ 1.42
RaraP11416 Terc-201ENSMUST00000082862 423 ntBASIC23.93■■□□□ 1.42
RaraP11416 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
RaraP11416 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RaraP11416 Gm28731-201ENSMUST00000185564 1569 ntBASIC23.91■■□□□ 1.42
RaraP11416 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.91■■□□□ 1.42
RaraP11416 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
RaraP11416 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RaraP11416 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.9■■□□□ 1.42
RaraP11416 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
RaraP11416 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
RaraP11416 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.89■■□□□ 1.41
RaraP11416 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.88■■□□□ 1.41
RaraP11416 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
RaraP11416 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
RaraP11416 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC23.87■■□□□ 1.41
RaraP11416 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
RaraP11416 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
RaraP11416 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RaraP11416 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
RaraP11416 Gm7199-201ENSMUST00000118327 1485 ntBASIC23.86■■□□□ 1.41
RaraP11416 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
RaraP11416 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
RaraP11416 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RaraP11416 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
RaraP11416 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
RaraP11416 Gm26766-202ENSMUST00000227544 2347 ntBASIC23.83■■□□□ 1.41
RaraP11416 AC167019.3-201ENSMUST00000228225 1266 ntBASIC23.83■■□□□ 1.41
RaraP11416 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC23.83■■□□□ 1.41
RaraP11416 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
RaraP11416 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
RaraP11416 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RaraP11416 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
RaraP11416 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RaraP11416 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
RaraP11416 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RaraP11416 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
RaraP11416 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.81■■□□□ 1.4
RaraP11416 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC23.81■■□□□ 1.4
RaraP11416 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
RaraP11416 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RaraP11416 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RaraP11416 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RaraP11416 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RaraP11416 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RaraP11416 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RaraP11416 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RaraP11416 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RaraP11416 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC23.78■■□□□ 1.4
RaraP11416 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
RaraP11416 Pkd1-207ENSMUST00000228550 1050 ntBASIC23.78■■□□□ 1.4
RaraP11416 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RaraP11416 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RaraP11416 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RaraP11416 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RaraP11416 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RaraP11416 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
RaraP11416 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RaraP11416 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RaraP11416 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.76■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms