Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Ndufaf2-202ENSMUST00000223734 556 ntBASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Gm43697-201ENSMUST00000199637 2581 ntBASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Prpf40aQ9R1C7 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 AC131743.5-201ENSMUST00000220775 1618 ntBASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Prpf40aQ9R1C7 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Prpf40aQ9R1C7 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Prpf40aQ9R1C7 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms