Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm14451-201ENSMUST00000121581 1542 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm37297-201ENSMUST00000192974 2384 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm4081-201ENSMUST00000195287 1838 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm6736-201ENSMUST00000166583 948 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm44335-201ENSMUST00000196879 141 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm44297-201ENSMUST00000198304 141 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gm44346-201ENSMUST00000198851 141 ntBASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Ldb3Q9JKS4 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.21□□□□□ -0.3
Ldb3Q9JKS4 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm23935-201ENSMUST00000102303 57 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm24270-201ENSMUST00000102326 57 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm24245-201ENSMUST00000157318 57 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm43125-201ENSMUST00000201724 730 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Ldb3Q9JKS4 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Ldb3Q9JKS4 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms