Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Gm12882-201ENSMUST00000121696 517 ntBASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Mir125a-201ENSMUST00000083545 68 ntBASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ube3bQ9ES34 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Gm29340-201ENSMUST00000188763 3854 ntBASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Mir8102-201ENSMUST00000184148 139 ntBASIC17.27■□□□□ 0.36
Ube3bQ9ES34 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Ube3bQ9ES34 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Ube3bQ9ES34 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ube3bQ9ES34 AC124751.1-201ENSMUST00000222716 1408 ntBASIC17.27■□□□□ 0.35
Ube3bQ9ES34 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Ube3bQ9ES34 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Mir7684-201ENSMUST00000183858 60 ntBASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ube3bQ9ES34 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC17.25■□□□□ 0.35
Ube3bQ9ES34 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Gm46209-201ENSMUST00000217912 553 ntBASIC17.25■□□□□ 0.35
Ube3bQ9ES34 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ube3bQ9ES34 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 75.3 ms