Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim60Q8VI40 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gm7153-201ENSMUST00000117092 455 ntBASIC15.09■□□□□ 0.01
Trim60Q8VI40 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.09■□□□□ 0.01
Trim60Q8VI40 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim60Q8VI40 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim60Q8VI40 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.08■□□□□ 0.01
Trim60Q8VI40 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Trim60Q8VI40 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.08■□□□□ 0.01
Trim60Q8VI40 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim60Q8VI40 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim60Q8VI40 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim60Q8VI40 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Trim60Q8VI40 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.08■□□□□ 0
Trim60Q8VI40 Gm14042-201ENSMUST00000120139 833 ntBASIC15.08■□□□□ 0
Trim60Q8VI40 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.08■□□□□ 0
Trim60Q8VI40 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trim60Q8VI40 Gm2272-201ENSMUST00000194903 582 ntBASIC15.08■□□□□ 0
Trim60Q8VI40 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.08■□□□□ 0
Trim60Q8VI40 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC15.08■□□□□ 0
Trim60Q8VI40 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC15.08■□□□□ 0
Trim60Q8VI40 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim60Q8VI40 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.07■□□□□ 0
Trim60Q8VI40 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Trim60Q8VI40 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.07■□□□□ 0
Trim60Q8VI40 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.07■□□□□ 0
Trim60Q8VI40 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15.07■□□□□ 0
Trim60Q8VI40 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Umpk-ps-201ENSMUST00000211897 827 ntBASIC15.07■□□□□ 0
Trim60Q8VI40 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.07■□□□□ 0
Trim60Q8VI40 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Trim60Q8VI40 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Trim60Q8VI40 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim60Q8VI40 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim60Q8VI40 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim60Q8VI40 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim60Q8VI40 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim60Q8VI40 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms