Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Usp47Q8BY87 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Gm3436-201ENSMUST00000179930 840 ntBASIC20.48■□□□□ 0.87
Usp47Q8BY87 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Usp47Q8BY87 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Usp47Q8BY87 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Gm7820-201ENSMUST00000121012 1052 ntBASIC20.47■□□□□ 0.87
Usp47Q8BY87 Gm6916-202ENSMUST00000205523 195 ntBASIC20.47■□□□□ 0.87
Usp47Q8BY87 Gm5186-201ENSMUST00000218781 920 ntBASIC20.47■□□□□ 0.87
Usp47Q8BY87 Gm9229-201ENSMUST00000222777 126 ntBASIC20.47■□□□□ 0.87
Usp47Q8BY87 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 AC162938.1-201ENSMUST00000213140 2323 ntBASIC20.47■□□□□ 0.87
Usp47Q8BY87 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp47Q8BY87 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Gm5626-201ENSMUST00000222151 1058 ntBASIC20.46■□□□□ 0.87
Usp47Q8BY87 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Sybu-209ENSMUST00000228639 4113 ntBASIC20.46■□□□□ 0.87
Usp47Q8BY87 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp47Q8BY87 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
Usp47Q8BY87 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Usp47Q8BY87 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Gm6263-201ENSMUST00000120029 1342 ntBASIC20.45■□□□□ 0.86
Usp47Q8BY87 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Gm15957-201ENSMUST00000118893 974 ntBASIC20.45■□□□□ 0.86
Usp47Q8BY87 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Gm27437-201ENSMUST00000183429 107 ntBASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp47Q8BY87 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp47Q8BY87 Ssr1-204ENSMUST00000225319 1610 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms