Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm45098-201ENSMUST00000207179 657 ntBASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 AC166341.4-201ENSMUST00000220625 123 ntBASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 AC148324.1-201ENSMUST00000219034 4240 ntBASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Upf3bQ3ULL6 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Upf3bQ3ULL6 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm43575-201ENSMUST00000196420 516 ntBASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm9182-201ENSMUST00000217829 639 ntBASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Chchd1-203ENSMUST00000224633 557 ntBASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Upf3bQ3ULL6 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Upf3bQ3ULL6 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Gm2810-201ENSMUST00000118681 990 ntBASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC15.58■□□□□ 0.08
Upf3bQ3ULL6 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms