Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.14□□□□□ -0.15
Usp39Q3TIX9 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Usp39Q3TIX9 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Trav13-3-201ENSMUST00000117226 336 ntBASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Gm13294-201ENSMUST00000121757 1330 ntBASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Usp39Q3TIX9 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Usp39Q3TIX9 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms