Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Trim63Q38HM4 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
Trim63Q38HM4 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Trim63Q38HM4 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.02□□□□□ -0.48
Trim63Q38HM4 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.48
Trim63Q38HM4 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Gm7514-201ENSMUST00000209475 934 ntBASIC12.02□□□□□ -0.49
Trim63Q38HM4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Pck2-205ENSMUST00000226352 2784 ntBASIC12.02□□□□□ -0.49
Trim63Q38HM4 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim63Q38HM4 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.01□□□□□ -0.49
Trim63Q38HM4 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC12.01□□□□□ -0.49
Trim63Q38HM4 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
Trim63Q38HM4 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim63Q38HM4 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC12□□□□□ -0.49
Trim63Q38HM4 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC12□□□□□ -0.49
Trim63Q38HM4 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC12□□□□□ -0.49
Trim63Q38HM4 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Gm43134-201ENSMUST00000199434 1886 ntBASIC12□□□□□ -0.49
Trim63Q38HM4 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
Trim63Q38HM4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Trim63Q38HM4 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Trim63Q38HM4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC12□□□□□ -0.49
Trim63Q38HM4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12□□□□□ -0.49
Trim63Q38HM4 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12□□□□□ -0.49
Trim63Q38HM4 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC12□□□□□ -0.49
Trim63Q38HM4 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Trim63Q38HM4 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim63Q38HM4 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms