Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Col17a1Q07563 Gm11591-201ENSMUST00000120063 702 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm5070-201ENSMUST00000177599 862 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm38317-201ENSMUST00000195564 343 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm10782-202ENSMUST00000223775 1480 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm16397-201ENSMUST00000122201 494 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm9678-201ENSMUST00000198979 1149 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC21.96■■□□□ 1.11
Col17a1Q07563 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Mxra8os-201ENSMUST00000097740 687 ntBASIC21.96■■□□□ 1.11
Col17a1Q07563 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Col17a1Q07563 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC21.96■■□□□ 1.11
Col17a1Q07563 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC21.95■■□□□ 1.1
Col17a1Q07563 Gm13385-201ENSMUST00000121089 220 ntBASIC21.95■■□□□ 1.1
Col17a1Q07563 Gm11675-201ENSMUST00000121873 832 ntBASIC21.95■■□□□ 1.1
Col17a1Q07563 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC21.95■■□□□ 1.1
Col17a1Q07563 Gm25951-201ENSMUST00000175330 64 ntBASIC21.95■■□□□ 1.1
Col17a1Q07563 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Col17a1Q07563 Gm9211-201ENSMUST00000182882 975 ntBASIC21.95■■□□□ 1.1
Col17a1Q07563 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Gm43579-201ENSMUST00000202387 1307 ntBASIC21.94■■□□□ 1.1
Col17a1Q07563 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Col17a1Q07563 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Col17a1Q07563 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Gm43081-201ENSMUST00000199082 1380 ntBASIC21.93■■□□□ 1.1
Col17a1Q07563 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
Col17a1Q07563 Gm4607-201ENSMUST00000206649 577 ntBASIC21.93■■□□□ 1.1
Col17a1Q07563 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Col17a1Q07563 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC21.92■■□□□ 1.1
Col17a1Q07563 Gm14726-201ENSMUST00000120623 896 ntBASIC21.92■■□□□ 1.1
Col17a1Q07563 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC21.92■■□□□ 1.1
Col17a1Q07563 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC21.92■■□□□ 1.1
Col17a1Q07563 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC21.92■■□□□ 1.1
Col17a1Q07563 Gm18393-201ENSMUST00000208349 1131 ntBASIC21.92■■□□□ 1.1
Col17a1Q07563 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Col17a1Q07563 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC21.92■■□□□ 1.1
Col17a1Q07563 AC123857.2-201ENSMUST00000225756 1582 ntBASIC21.92■■□□□ 1.1
Col17a1Q07563 Gm7292-201ENSMUST00000194706 2527 ntBASIC21.92■■□□□ 1.1
Col17a1Q07563 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Col17a1Q07563 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Col17a1Q07563 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
Col17a1Q07563 Gm11667-201ENSMUST00000119828 486 ntBASIC21.91■■□□□ 1.1
Col17a1Q07563 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC21.91■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms