Protein–RNA interactions for Protein: Q06831

Sox4, Transcription factor SOX-4, mousemouse

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox4Q06831 Gm25948-201ENSMUST00000175334 112 ntBASIC14.34□□□□□ -0.11
Sox4Q06831 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.34□□□□□ -0.11
Sox4Q06831 Gm10253-201ENSMUST00000194270 940 ntBASIC14.34□□□□□ -0.11
Sox4Q06831 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.34□□□□□ -0.11
Sox4Q06831 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.34□□□□□ -0.11
Sox4Q06831 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sox4Q06831 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sox4Q06831 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sox4Q06831 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sox4Q06831 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sox4Q06831 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.33□□□□□ -0.12
Sox4Q06831 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Gm9824-201ENSMUST00000178707 561 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.33□□□□□ -0.12
Sox4Q06831 Gm37230-201ENSMUST00000194491 818 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Gm9182-201ENSMUST00000217829 639 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 Gm5779-201ENSMUST00000218467 910 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 AC158529.1-201ENSMUST00000223618 239 ntBASIC14.33□□□□□ -0.12
Sox4Q06831 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.33□□□□□ -0.12
Sox4Q06831 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox4Q06831 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox4Q06831 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox4Q06831 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox4Q06831 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sox4Q06831 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sox4Q06831 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC14.32□□□□□ -0.12
Sox4Q06831 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Sox4Q06831 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.32□□□□□ -0.12
Sox4Q06831 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Gm13616-201ENSMUST00000120600 222 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.32□□□□□ -0.12
Sox4Q06831 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sox4Q06831 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox4Q06831 Gm37728-201ENSMUST00000195025 2292 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.32□□□□□ -0.12
Sox4Q06831 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Sox4Q06831 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Sox4Q06831 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sox4Q06831 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sox4Q06831 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sox4Q06831 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms