Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Gm8349-201ENSMUST00000182720 1003 ntBASIC11.95□□□□□ -0.5
Sdc1P18828 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sdc1P18828 Gm37722-201ENSMUST00000193757 208 ntBASIC11.95□□□□□ -0.5
Sdc1P18828 Gm43767-201ENSMUST00000198933 381 ntBASIC11.95□□□□□ -0.5
Sdc1P18828 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC11.95□□□□□ -0.5
Sdc1P18828 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 AC158538.2-201ENSMUST00000225455 906 ntBASIC11.95□□□□□ -0.5
Sdc1P18828 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sdc1P18828 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Sdc1P18828 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
Sdc1P18828 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.95□□□□□ -0.5
Sdc1P18828 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC11.95□□□□□ -0.5
Sdc1P18828 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sdc1P18828 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC11.94□□□□□ -0.5
Sdc1P18828 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm1818-201ENSMUST00000169406 1184 ntBASIC11.94□□□□□ -0.5
Sdc1P18828 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 AC135963.1-201ENSMUST00000211640 717 ntBASIC11.94□□□□□ -0.5
Sdc1P18828 AC135637.1-201ENSMUST00000227750 365 ntBASIC11.94□□□□□ -0.5
Sdc1P18828 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC11.94□□□□□ -0.5
Sdc1P18828 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC11.94□□□□□ -0.5
Sdc1P18828 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Gm10305-201ENSMUST00000195331 2475 ntBASIC11.94□□□□□ -0.5
Sdc1P18828 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sdc1P18828 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Sdc1P18828 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Il17rd-203ENSMUST00000225146 3366 ntBASIC11.93□□□□□ -0.5
Sdc1P18828 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sdc1P18828 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
Sdc1P18828 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC11.93□□□□□ -0.5
Sdc1P18828 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sdc1P18828 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC11.93□□□□□ -0.5
Sdc1P18828 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms