Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Gm14127-201ENSMUST00000117906 678 ntBASIC13.85□□□□□ -0.19
Msx1P13297 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.85□□□□□ -0.19
Msx1P13297 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.85□□□□□ -0.19
Msx1P13297 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Msx1P13297 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.85□□□□□ -0.19
Msx1P13297 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Msx1P13297 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Msx1P13297 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.84□□□□□ -0.19
Msx1P13297 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.84□□□□□ -0.19
Msx1P13297 Gm20825-201ENSMUST00000178149 1226 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Gm27618-201ENSMUST00000183671 60 ntBASIC13.84□□□□□ -0.19
Msx1P13297 Gm27306-201ENSMUST00000183970 107 ntBASIC13.84□□□□□ -0.19
Msx1P13297 Gm28707-201ENSMUST00000186134 558 ntTSL 3 BASIC13.84□□□□□ -0.19
Msx1P13297 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.84□□□□□ -0.19
Msx1P13297 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Gm37277-201ENSMUST00000194052 1111 ntBASIC13.84□□□□□ -0.19
Msx1P13297 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.84□□□□□ -0.19
Msx1P13297 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.84□□□□□ -0.19
Msx1P13297 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Gm10313-201ENSMUST00000095320 1002 ntBASIC13.84□□□□□ -0.19
Msx1P13297 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC13.84□□□□□ -0.19
Msx1P13297 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Msx1P13297 Efs-202ENSMUST00000227037 2540 ntBASIC13.84□□□□□ -0.19
Msx1P13297 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Msx1P13297 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Msx1P13297 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.19
Msx1P13297 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC13.83□□□□□ -0.19
Msx1P13297 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
Msx1P13297 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
Msx1P13297 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC13.83□□□□□ -0.19
Msx1P13297 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC13.83□□□□□ -0.2
Msx1P13297 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Msx1P13297 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Gm16425-201ENSMUST00000118143 3130 ntBASIC13.83□□□□□ -0.2
Msx1P13297 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC13.83□□□□□ -0.2
Msx1P13297 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.83□□□□□ -0.2
Msx1P13297 Gm28745-201ENSMUST00000190069 305 ntBASIC13.83□□□□□ -0.2
Msx1P13297 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Msx1P13297 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.83□□□□□ -0.2
Msx1P13297 Gm2423-201ENSMUST00000074863 733 ntBASIC13.83□□□□□ -0.2
Msx1P13297 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.83□□□□□ -0.2
Msx1P13297 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Msx1P13297 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Msx1P13297 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC13.82□□□□□ -0.2
Msx1P13297 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.82□□□□□ -0.2
Msx1P13297 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Msx1P13297 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms