Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col5a1O88207 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col5a1O88207 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Col5a1O88207 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col5a1O88207 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Col5a1O88207 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Col5a1O88207 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col5a1O88207 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
Col5a1O88207 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.97□□□□□ -0.33
Col5a1O88207 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC12.97□□□□□ -0.33
Col5a1O88207 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.97□□□□□ -0.33
Col5a1O88207 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.97□□□□□ -0.33
Col5a1O88207 Mir7654-201ENSMUST00000185082 70 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Gm44608-201ENSMUST00000206827 855 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Col5a1O88207 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Col5a1O88207 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col5a1O88207 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Col5a1O88207 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Gm15460-201ENSMUST00000118147 391 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.97□□□□□ -0.33
Col5a1O88207 Gm27572-201ENSMUST00000183702 255 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Gm5279-201ENSMUST00000199575 745 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.97□□□□□ -0.33
Col5a1O88207 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Col5a1O88207 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Gm43598-201ENSMUST00000202482 2479 ntBASIC12.96□□□□□ -0.33
Col5a1O88207 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Col5a1O88207 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.96□□□□□ -0.33
Col5a1O88207 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.96□□□□□ -0.33
Col5a1O88207 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.96□□□□□ -0.33
Col5a1O88207 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
Col5a1O88207 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Col5a1O88207 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col5a1O88207 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col5a1O88207 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Col5a1O88207 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Col5a1O88207 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.95□□□□□ -0.34
Col5a1O88207 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.95□□□□□ -0.34
Col5a1O88207 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.95□□□□□ -0.34
Col5a1O88207 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Col5a1O88207 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Col5a1O88207 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Col5a1O88207 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms