Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Gm10175-201ENSMUST00000086013 645 ntBASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Prpf40aQ9R1C7 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Gm23547-201ENSMUST00000158210 271 ntBASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.06■□□□□ 0.16
Prpf40aQ9R1C7 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Gm16026-204ENSMUST00000162652 683 ntBASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Prpf40aQ9R1C7 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Gm15427-201ENSMUST00000117288 531 ntBASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC16.04■□□□□ 0.16
Prpf40aQ9R1C7 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms