Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Gm42934-201ENSMUST00000196920 1345 ntBASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Chchd1-203ENSMUST00000224633 557 ntBASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Gm5421-201ENSMUST00000181698 2354 ntBASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Ldb3Q9JKS4 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Gm12134-201ENSMUST00000122109 520 ntBASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ldb3Q9JKS4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Mir6990-201ENSMUST00000183724 91 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ldb3Q9JKS4 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms