Protein–RNA interactions for Protein: Q9D6Y1

Ccdc3, Coiled-coil domain-containing protein 3, mousemouse

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc3Q9D6Y1 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc3Q9D6Y1 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Gm15483-201ENSMUST00000120338 456 ntBASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Gm27989-201ENSMUST00000184721 107 ntBASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Gm38294-201ENSMUST00000192831 381 ntBASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc3Q9D6Y1 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Gm27306-201ENSMUST00000183970 107 ntBASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Mir8102-201ENSMUST00000184148 139 ntBASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc3Q9D6Y1 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Gm13453-201ENSMUST00000118708 357 ntBASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc3Q9D6Y1 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms