Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Ddx56Q9D0R4 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ddx56Q9D0R4 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
Ddx56Q9D0R4 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Gm8000-201ENSMUST00000188378 592 ntBASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Gm45098-201ENSMUST00000207179 657 ntBASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ddx56Q9D0R4 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm5479-201ENSMUST00000160578 435 ntBASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm43514-201ENSMUST00000198852 424 ntBASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm20553-201ENSMUST00000204205 844 ntBASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ddx56Q9D0R4 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.33■□□□□ 0.05
Ddx56Q9D0R4 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Ddx56Q9D0R4 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.33■□□□□ 0.05
Ddx56Q9D0R4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ddx56Q9D0R4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ddx56Q9D0R4 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms