Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Brf1Q8CFK2 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gm12134-201ENSMUST00000122109 520 ntBASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Brf1Q8CFK2 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Gm2756-201ENSMUST00000195851 400 ntBASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.61■□□□□ 0.41
Brf1Q8CFK2 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm12620-201ENSMUST00000119791 1986 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm12612-201ENSMUST00000140182 1986 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm2810-201ENSMUST00000118681 990 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm9182-201ENSMUST00000217829 639 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Chchd1-203ENSMUST00000224633 557 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.6■□□□□ 0.41
Brf1Q8CFK2 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms