Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ssr1-204ENSMUST00000225319 1610 ntBASIC18.85■□□□□ 0.61
Trim28Q62318 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trim28Q62318 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim28Q62318 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC18.85■□□□□ 0.61
Trim28Q62318 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim28Q62318 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trim28Q62318 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC18.85■□□□□ 0.61
Trim28Q62318 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
Trim28Q62318 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim28Q62318 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
Trim28Q62318 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.85■□□□□ 0.61
Trim28Q62318 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
Trim28Q62318 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Gm45212-201ENSMUST00000205831 3403 ntBASIC18.84■□□□□ 0.61
Trim28Q62318 Gm10766-202ENSMUST00000194123 606 ntBASIC18.84■□□□□ 0.61
Trim28Q62318 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim28Q62318 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim28Q62318 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim28Q62318 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim28Q62318 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim28Q62318 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
Trim28Q62318 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim28Q62318 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC18.83■□□□□ 0.61
Trim28Q62318 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim28Q62318 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Trim28Q62318 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Trim28Q62318 Gm15393-201ENSMUST00000120499 219 ntBASIC18.83■□□□□ 0.6
Trim28Q62318 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Trim28Q62318 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim28Q62318 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Trim28Q62318 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim28Q62318 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trim28Q62318 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim28Q62318 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim28Q62318 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim28Q62318 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC18.82■□□□□ 0.6
Trim28Q62318 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC18.82■□□□□ 0.6
Trim28Q62318 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC18.82■□□□□ 0.6
Trim28Q62318 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 AC154846.1-201ENSMUST00000226278 862 ntBASIC18.82■□□□□ 0.6
Trim28Q62318 Gm9797-201ENSMUST00000052902 613 ntBASIC18.82■□□□□ 0.6
Trim28Q62318 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Ldb3-207ENSMUST00000227819 1499 ntBASIC18.82■□□□□ 0.6
Trim28Q62318 Gm45630-201ENSMUST00000210243 1911 ntBASIC18.82■□□□□ 0.6
Trim28Q62318 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim28Q62318 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim28Q62318 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Trim28Q62318 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC18.81■□□□□ 0.6
Trim28Q62318 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim28Q62318 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim28Q62318 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC18.81■□□□□ 0.6
Trim28Q62318 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms