Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ClpbQ60649 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ClpbQ60649 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ClpbQ60649 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ClpbQ60649 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ClpbQ60649 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ClpbQ60649 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.03□□□□□ -0.16
ClpbQ60649 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.03□□□□□ -0.16
ClpbQ60649 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.03□□□□□ -0.16
ClpbQ60649 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ClpbQ60649 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ClpbQ60649 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ClpbQ60649 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.03□□□□□ -0.16
ClpbQ60649 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.02□□□□□ -0.16
ClpbQ60649 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.02□□□□□ -0.16
ClpbQ60649 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
ClpbQ60649 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
ClpbQ60649 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Nrn1-204ENSMUST00000224323 1779 ntBASIC14.02□□□□□ -0.16
ClpbQ60649 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
ClpbQ60649 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ClpbQ60649 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.02□□□□□ -0.16
ClpbQ60649 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Gm6226-201ENSMUST00000117765 1146 ntBASIC14.02□□□□□ -0.17
ClpbQ60649 Gm16198-201ENSMUST00000118766 670 ntBASIC14.02□□□□□ -0.17
ClpbQ60649 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Gm11025-201ENSMUST00000140773 466 ntBASIC14.02□□□□□ -0.17
ClpbQ60649 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.02□□□□□ -0.17
ClpbQ60649 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.02□□□□□ -0.17
ClpbQ60649 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.02□□□□□ -0.17
ClpbQ60649 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.02□□□□□ -0.17
ClpbQ60649 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC14.02□□□□□ -0.17
ClpbQ60649 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ClpbQ60649 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
ClpbQ60649 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ClpbQ60649 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.01□□□□□ -0.17
ClpbQ60649 Gm23547-201ENSMUST00000158210 271 ntBASIC14.01□□□□□ -0.17
ClpbQ60649 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ClpbQ60649 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ClpbQ60649 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms