Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm45384-201ENSMUST00000210451 277 ntBASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Gm9115-201ENSMUST00000120192 1348 ntBASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Upf3aQ3ULJ3 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm28760-201ENSMUST00000185995 736 ntBASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm31326-201ENSMUST00000191856 1048 ntBASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm6916-202ENSMUST00000205523 195 ntBASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm9908-201ENSMUST00000211534 448 ntBASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Upf3aQ3ULJ3 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Gm44616-201ENSMUST00000206417 1732 ntBASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.3■□□□□ 0.04
Upf3aQ3ULJ3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC15.29■□□□□ 0.04
Upf3aQ3ULJ3 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms