Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Gm18222-201ENSMUST00000202416 1387 ntBASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.37■□□□□ 0.53
Ddb1Q3U1J4 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gm15240-201ENSMUST00000118156 720 ntBASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gm12882-201ENSMUST00000121696 517 ntBASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gm9252-201ENSMUST00000172364 1602 ntBASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gm29649-201ENSMUST00000185649 419 ntBASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddb1Q3U1J4 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Gm15957-201ENSMUST00000118893 974 ntBASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 AC192088.1-201ENSMUST00000227561 301 ntBASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddb1Q3U1J4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms