Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm15358-201ENSMUST00000119249 520 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm12497-201ENSMUST00000138778 237 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm7230-201ENSMUST00000173026 815 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm4535-201ENSMUST00000182274 558 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm43575-201ENSMUST00000196420 516 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm10355-201ENSMUST00000097146 517 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Col28a1Q2UY11 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gm29361-201ENSMUST00000183323 2000 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gm12260-201ENSMUST00000122447 411 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gm6736-201ENSMUST00000166583 948 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 CT943659.1-201ENSMUST00000215459 326 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Gm15590-201ENSMUST00000078419 552 ntBASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Col28a1Q2UY11 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.18□□□□□ -0.14
Col28a1Q2UY11 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms