Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Nkx3-1P97436 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gm10313-201ENSMUST00000095320 1002 ntBASIC12.59□□□□□ -0.39
Nkx3-1P97436 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Nkx3-1P97436 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Nkx3-1P97436 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Nkx3-1P97436 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Nkx3-1P97436 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm29310-201ENSMUST00000185468 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21825-201ENSMUST00000185728 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm29109-201ENSMUST00000185895 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21896-201ENSMUST00000186520 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21873-201ENSMUST00000186728 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21794-201ENSMUST00000187056 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21880-201ENSMUST00000187275 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21826-201ENSMUST00000187451 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21198-201ENSMUST00000188393 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21749-201ENSMUST00000189343 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21901-201ENSMUST00000189568 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm29424-201ENSMUST00000189716 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm28599-201ENSMUST00000189838 694 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21867-201ENSMUST00000189917 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm29269-201ENSMUST00000190087 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21722-201ENSMUST00000190153 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm28423-201ENSMUST00000190701 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21899-201ENSMUST00000190745 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21910-201ENSMUST00000191163 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm21849-201ENSMUST00000191571 696 ntBASIC12.58□□□□□ -0.4
Nkx3-1P97436 Gm28678-201ENSMUST00000191593 696 ntBASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms