Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mir5126-201ENSMUST00000175513 77 ntBASIC15.8■□□□□ 0.12
RaraP11416 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.8■□□□□ 0.12
RaraP11416 Gm2451-201ENSMUST00000199447 999 ntBASIC15.8■□□□□ 0.12
RaraP11416 Gm10290-201ENSMUST00000200451 999 ntBASIC15.8■□□□□ 0.12
RaraP11416 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.8■□□□□ 0.12
RaraP11416 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.8■□□□□ 0.12
RaraP11416 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.8■□□□□ 0.12
RaraP11416 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC15.8■□□□□ 0.12
RaraP11416 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
RaraP11416 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.8■□□□□ 0.12
RaraP11416 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
RaraP11416 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.8■□□□□ 0.12
RaraP11416 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
RaraP11416 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
RaraP11416 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RaraP11416 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RaraP11416 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.79■□□□□ 0.12
RaraP11416 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
RaraP11416 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC15.79■□□□□ 0.12
RaraP11416 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Gm2272-201ENSMUST00000194903 582 ntBASIC15.79■□□□□ 0.12
RaraP11416 Olfr286-202ENSMUST00000205305 969 ntBASIC15.79■□□□□ 0.12
RaraP11416 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RaraP11416 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.79■□□□□ 0.12
RaraP11416 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15.79■□□□□ 0.12
RaraP11416 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.78■□□□□ 0.12
RaraP11416 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC15.78■□□□□ 0.12
RaraP11416 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RaraP11416 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RaraP11416 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
RaraP11416 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.77■□□□□ 0.12
RaraP11416 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.77■□□□□ 0.12
RaraP11416 Gm16198-201ENSMUST00000118766 670 ntBASIC15.77■□□□□ 0.12
RaraP11416 Gm12350-201ENSMUST00000121208 462 ntBASIC15.77■□□□□ 0.12
RaraP11416 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC15.77■□□□□ 0.12
RaraP11416 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.77■□□□□ 0.12
RaraP11416 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
RaraP11416 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RaraP11416 Gm38391-201ENSMUST00000191720 4069 ntBASIC15.77■□□□□ 0.11
RaraP11416 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RaraP11416 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.77■□□□□ 0.11
RaraP11416 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RaraP11416 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
RaraP11416 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
RaraP11416 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RaraP11416 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
RaraP11416 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.77■□□□□ 0.11
RaraP11416 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.76■□□□□ 0.11
RaraP11416 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RaraP11416 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms