Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Gm15920-201ENSMUST00000118998 402 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Gm14822-201ENSMUST00000122247 291 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Gm26308-201ENSMUST00000157768 69 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Mir3113-201ENSMUST00000175478 76 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.87□□□□□ -0.19
Lire1P11260 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Gm10175-201ENSMUST00000086013 645 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 App-207ENSMUST00000227737 2827 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 BC037039-201ENSMUST00000192003 2205 ntBASIC13.87□□□□□ -0.19
Lire1P11260 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC13.87□□□□□ -0.19
Lire1P11260 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
Lire1P11260 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
Lire1P11260 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC13.86□□□□□ -0.19
Lire1P11260 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Lire1P11260 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC13.86□□□□□ -0.19
Lire1P11260 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.86□□□□□ -0.19
Lire1P11260 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.86□□□□□ -0.19
Lire1P11260 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lire1P11260 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
Lire1P11260 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Gm11873-201ENSMUST00000117877 1304 ntBASIC13.86□□□□□ -0.19
Lire1P11260 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lire1P11260 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Lire1P11260 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Lire1P11260 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
Lire1P11260 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.85□□□□□ -0.19
Lire1P11260 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC13.85□□□□□ -0.19
Lire1P11260 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lire1P11260 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 258.8 ms