Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Gm9200-201ENSMUST00000118513 1354 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Gm12341-201ENSMUST00000119724 503 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Gm7558-201ENSMUST00000193221 1165 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Gm37917-201ENSMUST00000194711 392 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Gm7619-201ENSMUST00000210649 1282 ntBASIC17.09■□□□□ 0.33
Scn11aQ9R053 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn11aQ9R053 Gm12742-201ENSMUST00000117326 410 ntBASIC17.08■□□□□ 0.33
Scn11aQ9R053 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC17.08■□□□□ 0.33
Scn11aQ9R053 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC17.08■□□□□ 0.33
Scn11aQ9R053 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Scn11aQ9R053 Gm5354-201ENSMUST00000182417 973 ntBASIC17.08■□□□□ 0.33
Scn11aQ9R053 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC17.08■□□□□ 0.33
Scn11aQ9R053 Gm37714-201ENSMUST00000194742 342 ntBASIC17.08■□□□□ 0.33
Scn11aQ9R053 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Scn11aQ9R053 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm5035-201ENSMUST00000215581 927 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 AC139350.3-201ENSMUST00000226151 420 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Mir497b-201ENSMUST00000093601 125 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 AC154527.2-201ENSMUST00000225256 1466 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm17420-201ENSMUST00000164753 153 ntBASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Scn11aQ9R053 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.06■□□□□ 0.32
Scn11aQ9R053 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 AC115735.4-201ENSMUST00000227460 1944 ntBASIC17.06■□□□□ 0.32
Scn11aQ9R053 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 AC159196.2-201ENSMUST00000224082 1622 ntBASIC17.06■□□□□ 0.32
Scn11aQ9R053 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Scn11aQ9R053 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Scn11aQ9R053 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms