Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Scn4aQ9ER60 Gm14208-201ENSMUST00000119645 678 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm8546-201ENSMUST00000178288 1264 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm8566-201ENSMUST00000120174 465 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm14277-201ENSMUST00000121195 360 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm27438-201ENSMUST00000183480 110 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm37922-201ENSMUST00000195596 455 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm10109-202ENSMUST00000206890 1211 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Mir497b-201ENSMUST00000093601 125 ntBASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn4aQ9ER60 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Gm16379-201ENSMUST00000161469 348 ntBASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Gm8762-201ENSMUST00000193486 339 ntBASIC19.54■□□□□ 0.72
Scn4aQ9ER60 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn4aQ9ER60 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm37497-201ENSMUST00000195830 798 ntBASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm5687-201ENSMUST00000118252 640 ntBASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn4aQ9ER60 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC19.52■□□□□ 0.72
Scn4aQ9ER60 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms