Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Gm11452-201ENSMUST00000122376 690 ntBASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdhb3Q91XZ7 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdhb3Q91XZ7 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm25745-201ENSMUST00000174945 133 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm6546-201ENSMUST00000192096 766 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm9172-201ENSMUST00000212092 954 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm17872-201ENSMUST00000222550 532 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdhb3Q91XZ7 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Acot6-202ENSMUST00000222921 3622 ntBASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Pcdhb3Q91XZ7 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms