Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm25911-201ENSMUST00000157621 56 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm27920-201ENSMUST00000183953 96 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Gm45612-201ENSMUST00000211320 160 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trim9Q8C7M3 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Gm11025-201ENSMUST00000140773 466 ntBASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Gm8000-201ENSMUST00000188378 592 ntBASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.13■□□□□ 0.17
Trim9Q8C7M3 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm4995-201ENSMUST00000117247 432 ntBASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm43514-201ENSMUST00000198852 424 ntBASIC16.12■□□□□ 0.17
Trim9Q8C7M3 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim9Q8C7M3 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms