Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Gm43509-201ENSMUST00000196551 2594 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC20.58■□□□□ 0.88
Usp47Q8BY87 AA619741-201ENSMUST00000195095 646 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Gm46209-201ENSMUST00000217912 553 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Wdyhv1-203ENSMUST00000226889 394 ntBASIC20.58■□□□□ 0.88
Usp47Q8BY87 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp47Q8BY87 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Gm5320-201ENSMUST00000207163 1519 ntBASIC20.57■□□□□ 0.88
Usp47Q8BY87 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Mir7684-201ENSMUST00000183858 60 ntBASIC20.57■□□□□ 0.88
Usp47Q8BY87 Gm27989-201ENSMUST00000184721 107 ntBASIC20.57■□□□□ 0.88
Usp47Q8BY87 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 AC102291.3-201ENSMUST00000226566 405 ntBASIC20.57■□□□□ 0.88
Usp47Q8BY87 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp47Q8BY87 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Gm5763-201ENSMUST00000155951 1530 ntBASIC20.56■□□□□ 0.88
Usp47Q8BY87 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC20.56■□□□□ 0.88
Usp47Q8BY87 AC156016.3-201ENSMUST00000228623 344 ntBASIC20.56■□□□□ 0.88
Usp47Q8BY87 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC20.56■□□□□ 0.88
Usp47Q8BY87 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC20.55■□□□□ 0.88
Usp47Q8BY87 Gm43598-201ENSMUST00000202482 2479 ntBASIC20.55■□□□□ 0.88
Usp47Q8BY87 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Fbxl12-205ENSMUST00000140702 1555 ntBASIC20.55■□□□□ 0.88
Usp47Q8BY87 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Usp47Q8BY87 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Gm10605-202ENSMUST00000183019 3198 ntBASIC20.54■□□□□ 0.88
Usp47Q8BY87 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Gm23547-201ENSMUST00000158210 271 ntBASIC20.54■□□□□ 0.88
Usp47Q8BY87 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Usp47Q8BY87 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms