Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ddx55Q6ZPL9 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Gm27892-201ENSMUST00000185017 106 ntBASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Mir6420-201ENSMUST00000185032 102 ntBASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ddx55Q6ZPL9 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Gm5303-201ENSMUST00000117943 1252 ntBASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Gm21470-201ENSMUST00000187680 696 ntBASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 AC166349.1-201ENSMUST00000220866 695 ntBASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 AC131068.2-201ENSMUST00000226175 1453 ntBASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
Ddx55Q6ZPL9 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Mir1982-201ENSMUST00000157368 74 ntBASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ddx55Q6ZPL9 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ddx55Q6ZPL9 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm5356-201ENSMUST00000093326 615 ntBASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ddx55Q6ZPL9 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms