Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.67□□□□□ -0.22
ShhQ62226 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC13.67□□□□□ -0.22
ShhQ62226 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ShhQ62226 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ShhQ62226 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
ShhQ62226 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Gm20553-201ENSMUST00000204205 844 ntBASIC13.66□□□□□ -0.22
ShhQ62226 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Gm38318-201ENSMUST00000195769 1706 ntBASIC13.66□□□□□ -0.22
ShhQ62226 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ShhQ62226 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.66□□□□□ -0.22
ShhQ62226 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.66□□□□□ -0.22
ShhQ62226 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ShhQ62226 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ShhQ62226 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gm14780-201ENSMUST00000118387 2737 ntBASIC13.65□□□□□ -0.22
ShhQ62226 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
ShhQ62226 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gm9768-201ENSMUST00000206007 2861 ntBASIC13.65□□□□□ -0.22
ShhQ62226 Gm12151-201ENSMUST00000121374 290 ntBASIC13.65□□□□□ -0.22
ShhQ62226 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC13.65□□□□□ -0.22
ShhQ62226 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.65□□□□□ -0.22
ShhQ62226 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC13.65□□□□□ -0.22
ShhQ62226 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ShhQ62226 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ShhQ62226 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
ShhQ62226 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.64□□□□□ -0.23
ShhQ62226 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC13.64□□□□□ -0.23
ShhQ62226 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.64□□□□□ -0.23
ShhQ62226 Mir8102-201ENSMUST00000184148 139 ntBASIC13.64□□□□□ -0.23
ShhQ62226 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.64□□□□□ -0.23
ShhQ62226 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ShhQ62226 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms