Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm22018-201ENSMUST00000104357 131 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm11008-201ENSMUST00000109032 622 ntTSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm16177-201ENSMUST00000120728 718 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm24990-201ENSMUST00000157406 323 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm21739-202ENSMUST00000188917 933 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm43378-201ENSMUST00000199336 582 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm17823-201ENSMUST00000217830 1006 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC14.29□□□□□ -0.12
Col9a1Q05722 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.29□□□□□ -0.12
Col9a1Q05722 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Col9a1Q05722 1700011I03Rik-201ENSMUST00000079738 1013 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Col9a1Q05722 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Col9a1Q05722 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm24255-201ENSMUST00000104481 128 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12616-201ENSMUST00000118594 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm8566-201ENSMUST00000120174 465 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12624-201ENSMUST00000177615 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12621-201ENSMUST00000177760 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12615-201ENSMUST00000177970 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12622-201ENSMUST00000177975 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12627-201ENSMUST00000178412 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12625-201ENSMUST00000179122 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12614-201ENSMUST00000179586 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm12613-201ENSMUST00000180323 382 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.28□□□□□ -0.12
Col9a1Q05722 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm44270-201ENSMUST00000203084 1234 ntBASIC14.28□□□□□ -0.12
Col9a1Q05722 Gm4265-201ENSMUST00000206701 674 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Col9a1Q05722 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col9a1Q05722 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col9a1Q05722 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.27□□□□□ -0.12
Col9a1Q05722 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col9a1Q05722 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col9a1Q05722 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Col9a1Q05722 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col9a1Q05722 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.27□□□□□ -0.12
Col9a1Q05722 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Col9a1Q05722 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Col9a1Q05722 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC14.27□□□□□ -0.13
Col9a1Q05722 Gm38018-201ENSMUST00000195651 540 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 Gm43222-201ENSMUST00000199013 603 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.27□□□□□ -0.13
Col9a1Q05722 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Lsm3-205ENSMUST00000206947 618 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Gm19208-201ENSMUST00000213861 912 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.27□□□□□ -0.13
Col9a1Q05722 AC172027.1-201ENSMUST00000217659 337 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 AC149588.3-201ENSMUST00000227515 150 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 4930555F03Rik-201ENSMUST00000033963 717 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Gm10012-201ENSMUST00000078252 192 ntBASIC14.27□□□□□ -0.13
Col9a1Q05722 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Col9a1Q05722 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Col9a1Q05722 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col9a1Q05722 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms