Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.47□□□□□ -0.41
Col8a1Q00780 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.47□□□□□ -0.41
Col8a1Q00780 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Col8a1Q00780 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col8a1Q00780 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC12.47□□□□□ -0.41
Col8a1Q00780 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col8a1Q00780 AC164565.1-201ENSMUST00000217520 1484 ntBASIC12.46□□□□□ -0.41
Col8a1Q00780 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
Col8a1Q00780 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.46□□□□□ -0.41
Col8a1Q00780 Gm14722-201ENSMUST00000118943 689 ntBASIC12.46□□□□□ -0.41
Col8a1Q00780 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.46□□□□□ -0.41
Col8a1Q00780 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.46□□□□□ -0.41
Col8a1Q00780 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.46□□□□□ -0.41
Col8a1Q00780 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col8a1Q00780 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC12.46□□□□□ -0.41
Col8a1Q00780 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col8a1Q00780 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col8a1Q00780 AC115863.1-201ENSMUST00000214815 1813 ntBASIC12.46□□□□□ -0.42
Col8a1Q00780 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.46□□□□□ -0.42
Col8a1Q00780 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col8a1Q00780 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col8a1Q00780 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col8a1Q00780 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Col8a1Q00780 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC12.46□□□□□ -0.42
Col8a1Q00780 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Col8a1Q00780 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.45□□□□□ -0.42
Col8a1Q00780 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gm10766-202ENSMUST00000194123 606 ntBASIC12.45□□□□□ -0.42
Col8a1Q00780 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.45□□□□□ -0.42
Col8a1Q00780 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Col8a1Q00780 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col8a1Q00780 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
Col8a1Q00780 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gm6756-201ENSMUST00000180647 1620 ntBASIC12.44□□□□□ -0.42
Col8a1Q00780 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col8a1Q00780 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms