Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm37179-201ENSMUST00000194862 823 ntBASIC12□□□□□ -0.49
Sdc1P18828 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC12□□□□□ -0.49
Sdc1P18828 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC12□□□□□ -0.49
Sdc1P18828 Gm10293-201ENSMUST00000076317 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm6316-201ENSMUST00000082064 1020 ntBASIC12□□□□□ -0.49
Sdc1P18828 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC12□□□□□ -0.49
Sdc1P18828 Gm37644-201ENSMUST00000192190 2270 ntBASIC12□□□□□ -0.49
Sdc1P18828 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Grk6-207ENSMUST00000225925 2769 ntBASIC11.99□□□□□ -0.49
Sdc1P18828 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Sdc1P18828 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Sdc1P18828 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Sdc1P18828 Mir1668-201ENSMUST00000184114 107 ntBASIC11.99□□□□□ -0.49
Sdc1P18828 Gm2274-201ENSMUST00000184539 609 ntBASIC11.99□□□□□ -0.49
Sdc1P18828 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.99□□□□□ -0.49
Sdc1P18828 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Sdc1P18828 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.99□□□□□ -0.49
Sdc1P18828 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.98□□□□□ -0.49
Sdc1P18828 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.98□□□□□ -0.49
Sdc1P18828 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Gm14451-201ENSMUST00000121581 1542 ntBASIC11.98□□□□□ -0.49
Sdc1P18828 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.98□□□□□ -0.49
Sdc1P18828 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Sdc1P18828 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC11.98□□□□□ -0.49
Sdc1P18828 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Mmp14-206ENSMUST00000225641 3238 ntBASIC11.98□□□□□ -0.49
Sdc1P18828 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sdc1P18828 AC121801.1-201ENSMUST00000225363 1899 ntBASIC11.97□□□□□ -0.49
Sdc1P18828 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sdc1P18828 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sdc1P18828 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms