Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Cdx1P18111 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.84□□□□□ -0.51
Cdx1P18111 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Gm10305-201ENSMUST00000195331 2475 ntBASIC11.84□□□□□ -0.51
Cdx1P18111 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC11.84□□□□□ -0.51
Cdx1P18111 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC11.84□□□□□ -0.51
Cdx1P18111 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC11.84□□□□□ -0.51
Cdx1P18111 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC11.83□□□□□ -0.51
Cdx1P18111 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Cdx1P18111 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC11.83□□□□□ -0.52
Cdx1P18111 Gm44454-201ENSMUST00000198541 138 ntBASIC11.83□□□□□ -0.52
Cdx1P18111 Gm44430-201ENSMUST00000203376 995 ntBASIC11.83□□□□□ -0.52
Cdx1P18111 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC11.83□□□□□ -0.52
Cdx1P18111 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cdx1P18111 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cdx1P18111 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.83□□□□□ -0.52
Cdx1P18111 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cdx1P18111 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx1P18111 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm38346-201ENSMUST00000192379 2639 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Cdx1P18111 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm12626-201ENSMUST00000117339 1983 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Gm12623-201ENSMUST00000119849 1983 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm1818-201ENSMUST00000169406 1184 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC11.82□□□□□ -0.52
Cdx1P18111 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx1P18111 AW822252-206ENSMUST00000208904 237 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC11.82□□□□□ -0.52
Cdx1P18111 AC161829.1-201ENSMUST00000220298 281 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx1P18111 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Cdx1P18111 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms