Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC11.42□□□□□ -0.58
Hoxd3P09027 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm43598-201ENSMUST00000202482 2479 ntBASIC11.42□□□□□ -0.58
Hoxd3P09027 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm20815-201ENSMUST00000115496 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm25948-201ENSMUST00000175334 112 ntBASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm21812-202ENSMUST00000188908 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm16833-202ENSMUST00000189204 672 ntTSL 2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 9330118I20Rik-201ENSMUST00000203390 1066 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Hoxd3P09027 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Hoxd3P09027 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm27920-201ENSMUST00000183953 96 ntBASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm27430-201ENSMUST00000184585 107 ntBASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm44333-201ENSMUST00000197168 107 ntBASIC11.4□□□□□ -0.58
Hoxd3P09027 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Hoxd3P09027 AC124732.2-201ENSMUST00000221977 316 ntBASIC11.4□□□□□ -0.58
Hoxd3P09027 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC11.4□□□□□ -0.58
Hoxd3P09027 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms