Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm45504-201ENSMUST00000211407 2107 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm5357-201ENSMUST00000212720 1924 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Camk2g-217ENSMUST00000226630 1937 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Gm18246-201ENSMUST00000221023 728 ntBASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Gm10175-201ENSMUST00000086013 645 ntBASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim3Q9R1R2 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.8□□□□□ -0.2
Trim3Q9R1R2 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim3Q9R1R2 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Gm4995-201ENSMUST00000117247 432 ntBASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 CT943659.1-201ENSMUST00000215459 326 ntBASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim3Q9R1R2 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms