Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Mir1938-201ENSMUST00000158746 100 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm28631-201ENSMUST00000190740 334 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm29541-201ENSMUST00000191351 678 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm45059-201ENSMUST00000205558 1077 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Gm6180-201ENSMUST00000065243 498 ntBASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col13a1Q9R1N9 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gm25144-201ENSMUST00000179561 110 ntBASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gm25352-201ENSMUST00000179815 110 ntBASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gm7286-201ENSMUST00000182691 1007 ntBASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Gm44719-201ENSMUST00000206404 149 ntBASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col13a1Q9R1N9 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Gm13015-201ENSMUST00000118674 204 ntBASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Gm28630-201ENSMUST00000187806 498 ntBASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Gm7775-201ENSMUST00000218871 853 ntBASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col13a1Q9R1N9 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms