Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Gm14494-201ENSMUST00000118786 435 ntBASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prpf40aQ9R1C7 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gm10313-201ENSMUST00000095320 1002 ntBASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prpf40aQ9R1C7 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prpf40aQ9R1C7 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prpf40aQ9R1C7 Carlr-201ENSMUST00000181515 2574 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms