Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ube3bQ9ES34 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ube3bQ9ES34 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ube3bQ9ES34 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Ube3bQ9ES34 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ube3bQ9ES34 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.38■□□□□ 0.37
Ube3bQ9ES34 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm12428-201ENSMUST00000119844 727 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm14042-201ENSMUST00000120139 833 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm27680-201ENSMUST00000184192 160 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm45453-201ENSMUST00000211758 853 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Gm16476-201ENSMUST00000221544 139 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Shd-206ENSMUST00000225145 998 ntBASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube3bQ9ES34 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Gm14767-201ENSMUST00000121559 586 ntBASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube3bQ9ES34 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms